|  |  |  | Before weight loss | After weight loss | ||||||
Differential analysis | |||||||||||
Illumina probe ID | CpG site chromosome and positiona | UCSC gene name | Location | AB mean beta | OM mean beta | Δbeta | Adjusted P value | AB mean beta | OM mean beta | Δbeta | Adjusted P value |
cg01168289 | 11:32421514 | WT1 | Body |  |  |  |  | 0.584 | 0.745 | −0.161 | 0.030 |
cg27019929 | 11:3421518 | WT1 | Body |  |  |  |  | 0.626 | 0.845 | −0.221 | 2.1 × 10−4 |
cg24325551 | 11:3421635 | WT1 | Body | 0.502 | 0.713 | −0.211 | 0.002 | 0.425 | 0.665 | −0.241 | 2.1 × 10−5 |
cg20449659 | 11:3421752 | WT1 | Body | 0.594 | 0.795 | −0.201 | 0.03 | 0.469 | 0.751 | −0.282 | 5.7 × 10−6 |
cg08575722 | 11:3421845 | WT1 | Body |  |  |  |  | 0.36 | 0.622 | −0.262 | 0.003 |
cg09695430 | 11:32447944 | WT1 | Body | 0.326 | 0.527 | −0.2 | 1.2 × 10−4 | 0.259 | 0.557 | −0.298 | 1.2 × 10−5 |
cg20204986 | 11:32448067 | WT1 | Body | 0.406 | 0.596 | −0.19 | 0.001 | 0.314 | 0.596 | −0.281 | 2.1 × 10−4 |
cg13638420 | 11:32448293 | WT1 | Body | 0.236 | 0.391 | −0.155 | 0.014 | 0.195 | 0.447 | −0.253 | 0.009 |
cg12006284 | 11:32449638 | WT1 | Body | 0.303 | 0.448 | −0.145 | 0.022 |  |  |  |  |
cg13540960 | 11:32450244 | WT1 | Body | 0.082 | 0.270 | −0.188 | 0.05 |  |  |  |  |
cg05222924 | 11:32450486 | WT1 | Body | 0.072 | 0.238 | −0.166 | 1.3 × 10−4 |  |  |  |  |
cg19211915 | 11:32452513 | WT1 | Body | 0.183 | 0.250 | −0.067 | 0.03 |  |  |  |  |
cg09234616 | 11:32452592 | WT1 | Body | 0.074 | 0.203 | −0.129 | 0.025 |  |  |  |  |
cg08079266 | 16:817098 | MSLN | Body | 0.877 | 0.922 | −0.045 | 0.03 |  |  |  |  |
cg04476874 | 19:345778 | MIER2 | TSS1500 |  |  |  |  | 0.527 | 0.735 | −0.208 | 2.7 × 10−5 |
Biomarker approach | |||||||||||
Illumina probe ID | CpG site chromosome and positiona | UCSC gene name | Location | AB mean beta | OM mean beta | Δbeta | Merit score | AB mean beta | OM mean beta | Δbeta | Merit score |
cg05069835 | 7:76139338 | UPK3B | TSS1500 |  |  |  |  | 0.49 | 0.557 | −0.067 | 0.006 |
cg24325551 | 11:3421635 | WT1 | Body | 0.502 | 0.713 | −0.211 | 0.109 |  |  |  |  |
cg10244666 | 11:3421808 | WT1 | Body | Â | Â | Â | Â | 0.639 | 0.357 | 0.282 | 0.130 |
cg08575722 | 11:3421845 | WT1 | Body | 0.479 | 0.648 | −0.169 | 0.035 |  |  |  |  |
cg20204986 | 11:32448067 | WT1 | Body | 0.406 | 0.596 | −0.19 | 0.086 |  |  |  |  |
cg13638420 | 11:32448293 | WT1 | Body | Â | Â | Â | Â | 0.447 | 0.195 | 0.252 | 0.147 |
cg12006284 | 11:32449638 | WT1 | Body | Â | Â | Â | Â | 0.506 | 0.274 | 0.232 | 0.074 |
cg04456238 | 11:32450104 | WT1 |  | 0.301 | 0.437 | −0.136 | 0.025 | 0.481 | 0.251 | 0.23 | 0.069 |
cg13540960 | 11:32450244 | WT1 |  | 0.082 | 0.27 | −0.188 | 0.099 |  |  |  |  |
cg05222924 | 11:32450486 | WT1 | Â | Â | Â | Â | Â | 0.316 | 0.091 | 0.225 | 0.099 |
cg06516124 | 11:32450591 | WT1 |  | 0.089 | 0.184 | −0.095 | 0.017 |  |  |  |  |
cg09234616 | 11:32452592 | WT1 |  | 0.074 | 0.203 | −0.129 | 0.049 |  |  |  |  |
cg15315385 | 11:32452839 | WT1 | Â | Â | Â | Â | Â | 0.27 | 0.169 | 0.101 | 0.016 |
cg04130356 | 16:810643 | MSLN | TSS1500 |  |  |  |  | 0.686 | 0.789 | −0.103 | 0.04 |
cp0838005 | 16:816149 | MSLN | Body | Â | Â | Â | Â | 0.946 | 0.883 | 0.063 | 0.006 |
cg08581018 | 16:832942 | MSLNL | TSS200 |  |  |  |  | 0.621 | 0.722 | −0.101 | 0.015 |
cg16804923 | 16:834399 | MSLNL | TSS1500 | 0.838 | 0.898 | −0.06 | 0.012 | 0.861 | 0.756 | 0.105 | 0.029 |
cg04476874 | 19:345778 | MIER2 | TSS1500 | Â | Â | Â | Â | 0.735 | 0.527 | 0.208 | 0.134 |