From: Weight loss after Roux-En-Y gastric bypass surgery reveals skeletal muscle DNA methylation changes
Chr | Position | Gene | Pre-surgery methylation % | Post-surgery methylation % | P value | q value | Genic region | CpG region |
---|---|---|---|---|---|---|---|---|
chr2 | 27,498,318 | DNAJC5G | 51.83 ± 9.21 | 89.02 ± 2.98 | 1.01E−09 | 0.00067 | utr5 | InterCpgi |
chr7 | 20,830,624 | SP8 | 1.30 ± 0.84 | 13.90 ± 1.02 | 2.01E−09 | 0.00076 | Intergenic | CpG_Island |
chr1 | 228,504,058 | OBSCN | 42.29 ± 6.19 | 84.61 ± 2.99 | 3.28E−09 | 0.00109 | Intron | CpG_Island |
chr10 | 119,271,421 | EMX2OS | 42.57 ± 2.47 | 68.77 ± 3.23 | 6.08E−09 | 0.00161 | Intergenic | InterCpgi |
chr1 | 51,154,377 | FAF1 | 92.12 ± 2.38 | 100 ± 0 | 1.16E−08 | 0.00220 | Intron | InterCpgi |
chr2 | 11,925,218 | LPIN1 | 0 ± 0 | 9.68 ± 1.23 | 1.55E−07 | 0.01243 | Intron | CpG_Island |
chr1 | 240,347,650 | FMN2 | 84.75 ± 4.18 | 99.35 ± 0.65 | 2.06E−07 | 0.01352 | Intron | InterCpgi |
chr4 | 57,068,530 | KIAA1211 | 83.59 ± 2.29 | 98.25 ± 1.13 | 1.89E−07 | 0.01352 | utr5 | InterCpgi |
chr18 | 13,431,993 | C18orf1 | 84.39 ± 3.53 | 100 ± 0 | 3.16E−07 | 0.01820 | Intron | InterCpgi |
chr3 | 113,160,431 | WDR52 | 13.71 ± 2.73 | 46.89 ± 6.19 | 3.49E−07 | 0.01886 | Promoter | CpG_Island |
chr13 | 96,414,410 | DNAJC3 | 90.20 ± 2.64 | 100 ± 0 | 5.33E−07 | 0.02357 | Intron | InterCpgi |
chr1 | 197,108,554 | ASPM | 86.50 ± 4.35 | 100 ± 0 | 7.84E−07 | 0.03038 | Intron | InterCpgi |
chr17 | 5,462,805 | NLRP1 | 80.80 ± 5.66 | 99.05 ± 0.95 | 7.90E−07 | 0.03038 | Exon | InterCpgi |
chr19 | 54,872,598 | LAIR1 | 67.12 ± 6.27 | 93.87 ± 2.11 | 8.60E−07 | 0.03079 | Exon | InterCpgi |
chr11 | 36,512,043 | TRAF6 | 40.53 ± 4.68 | 65.66 ± 3.25 | 8.80E−07 | 0.03079 | Exon | InterCpgi |
chr15 | 52,248,473 | LEO1 | 18.60 ± 3.51 | 45.53 ± 4.24 | 9.21E−07 | 0.03131 | Intron | InterCpgi |
chr22 | 50,919,564 | ADM2 | 2.23 ± 0.81 | 11.87 ± 1.89 | 1.17E−06 | 0.03742 | Promoter | CpG_Island |
chr7 | 135,258,846 | NUP205 | 88.18 ± 3.66 | 100 ± 0 | 1.20E−06 | 0.03793 | Intron | InterCpgi |
chr1 | 93,172,465 | EVI5 | 83.13 ± 3.46 | 100 ± 0 | 1.42E−06 | 0.04189 | Intron | InterCpgi |
chr12 | 133,125,172 | FBRSL1 | 88.19 ± 3.33 | 100 ± 0 | 1.44E−06 | 0.04203 | intron | North_shore |
chr5 | 137,729,043 | KDM3B | 84.36 ± 3.76 | 96.62 ± 1.45 | 1.52E−06 | 0.04294 | Exon | InterCpgi |
chr3 | 9,989,586 | PRRT3 | 45.47 ± 3.64 | 74.18 ± 3.58 | 1.49E−06 | 0.04294 | Exon | CpG_Island |
chrX | 66,764,054 | AR | 15.74 ± 4.49 | 42.72 ± 2.58 | 1.67E−06 | 0.04508 | utr5 | CpG_Island |
chr1 | 91,184,127 | BARHL2 | 0 ± 0 | 2.97 ± 0.83 | 1.81E−06 | 0.04740 | Promoter | CpG_Island |
chr7 | 939,123 | ADAP1 | 40.13 ± 9.99 | 74.26 ± 3.10 | 1.83E−06 | 0.04759 | Exon | South_shelf |
chr1 | 34,642,648 | C1orf94 | 0 ± 0 | 7.35 ± 2.25 | 2.04E−06 | 0.04785 | utr5 | CpG_Island |
chr7 | 71,562,951 | CALN1 | 81.90 ± 4.23 | 98.70 ± 1.30 | 1.96E−06 | 0.04785 | Intron | InterCpgi |
chr14 | 105,353,824 | KIAA0284 | 62.07 ± 7.36 | 90.15 ± 4.41 | 1.93E−06 | 0.04785 | Exon | South_shelf |