Skip to main content

Table 2 Thirty-three DMPs representing six DMRs associated with MS

From: Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

CpG ID

Chr

Pos (bp)

DMR

Gene

Region

F stat

P value

Control

Case

∆beta

cg17178900

1

205,818,956

1

PM20D1

Body

6.54

0.014

0.470

0.646

0.176

cg26354017

1

205,819,088

1

PM20D1

1stExon

6.50

0.014

0.411

0.599

0.188

cg14159672

1

205,819,179

1

PM20D1

1stExon

6.09

0.017

0.444

0.616

0.173

cg14893161

1

205,819,251

1

PM20D1

5′UTR

7.42

0.009

0.328

0.498

0.169

cg11965913

1

205,819,406

1

PM20D1

TSS200

5.38

0.025

0.303

0.467

0.164

cg24503407

1

205,819,492

1

PM20D1

TSS1500

6.38

0.015

0.404

0.560

0.157

cg25644740

6

29,894,152

2

HCG4P6

TSS1500

5.93

0.019

0.448

0.612

0.164

cg04520169

6

29,894,195

2

HCG4P6

TSS1500

7.27

0.010

0.377

0.524

0.148

cg23237314

6

29,894,197

2

HCG4P6

TSS1500

6.97

0.011

0.374

0.492

0.117

cg08491487

6

30,039,130

3

RNF39

Body

10.02

0.003

0.078

0.181

0.103

cg00947782

6

30,039,142

3

RNF39

Body

12.34

0.001

0.102

0.210

0.108

cg03343571

6

30,039,175

3

RNF39

Body

13.64

0.001

0.212

0.334

0.122

cg13185413

6

30,039,202

3

RNF39

Body

11.78

0.001

0.206

0.326

0.119

cg09279736

6

30,039,403

3

RNF39

Body

14.19

0.000

0.287

0.404

0.117

cg07382347

6

30,039,408

3

RNF39

Body

13.22

0.001

0.153

0.295

0.142

cg13401893

6

30,039,432

3

RNF39

Body

19.38

0.000

0.350

0.508

0.158

cg12633154

6

30,039,435

3

RNF39

Body

18.69

0.000

0.310

0.477

0.167

cg10568066

6

30,039,442

3

RNF39

Body

22.29

0.000

0.372

0.560

0.188

cg16078649

6

30,039,466

3

RNF39

Body

13.37

0.001

0.346

0.451

0.105

cg10930308

6

30,039,476

3

RNF39

Body

12.69

0.001

0.193

0.317

0.125

cg01341801

6

32,489,203

4

DRB5

Body

4.419

0.041

0.249

0.455

0.205

cg26981746

6

32,490,012

4

DRB5

Body

4.645

0.036

0.501

0.633

0.132

cg12015991

6

32,490,043

4

DRB5

Body

5.591

0.022

0.649

0.778

0.128

cg08578320

6

32,552,039

5

DRB1

Body

6.558

0.014

0.754

0.588

−0.166

cg09139047

6

32,552,042

5

DRB1

Body

5.129

0.028

0.754

0.576

−0.179

cg15602423

6

32,552,095

5

DRB1

Body

8.966

0.004

0.659

0.387

−0.272

cg15982117

6

32,552,106

5

DRB1

Body

5.811

0.020

0.684

0.492

−0.192

cg14645244

6

32,552,205

5

DRB1

Body

6.068

0.017

0.521

0.318

−0.203

cg09949906

6

32,552,350

5

DRB1

Body

5.076

0.029

0.699

0.507

−0.192

cg10632894

6

32,552,453

5

DRB1

Body

4.536

0.038

0.825

0.681

−0.144

cg01053087

8

637,909

6

ERICH1

Body

10.55

0.002

0.330

0.164

−0.166

cg05875700

8

638,208

6

ERICH1

Body

8.864

0.005

0.319

0.120

−0.199

cg12641240

8

638,330

6

ERICH1

Body

6.055

0.018

0.194

0.069

−0.125

  1. DMP differentially methylated position, DMR differentially methylated region