|
SNP
|
Chromosome
|
Position (bp)
|
Strand
|
Allele (minor/major)
|
MAF (%)
|
DNAm site
|
Effect ± SE
|
p
|
|---|
|
ZFHX3
|
|
rs7193343
|
16
|
73,029,160
|
+
|
C/T
|
40.4
|
cg07786668
|
−0.0011 ± 0.0011
|
0.307
|
| | | | | | |
cg00614832
|
0.0004 ± 0.0013
|
0.755
|
|
rs2106261
|
16
|
73,051,620
|
+
|
T/C
|
33.1
|
cg07786668
|
−0.0016 ± 0.0011
|
0.176
|
| | | | | | |
cg00614832
|
0.0004 ± 0.0014
|
0.774
|
|
rs879324
|
16
|
73,068,678
|
+
|
A/G
|
38.3
|
cg07786668
|
−0.0015 ± 0.0011
|
0.186
|
| | | | | | |
cg00614832
|
0.0005 ± 0.0014
|
0.718
|
|
SMARCA4
|
|
rs3786725a
|
19
|
11,166,827
|
+
|
A/G
|
11.2
|
cg17218495
|
0.0008 ± 0.0011
|
0.461
|
- The Effect and p values were calculated with a GLM. The Effect value represents the change in β-value per minor allele copy for the SNP
-
aThis SNP is in linkage disequilibrium with rs1122608 in SMARCA4 (r
2 = 0.956 based on Asian samples of the 1000 Genomes Project phase I)
