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Table 2 Array CpGs with significant methylation differences in GDM cord bloods

From: Epigenetic signatures of gestational diabetes mellitus on cord blood methylation

Array CpG Gene Chromosomal locationa β b data set A β b data set B Adjusted p value
cg02943336 CARD11 Chr7: 2,959,067 1.08% 1.33% 0.022
cg11449134 CpG island Chr19: 51,897,791 −0.63% −0.63% 0.028
cg26001655 KIAA1530 Chr4: 1,356,770 1.20% 1.25% 0.028
cg11010397 AMPH Chr7: 38,671,977 −1.37% −1.81% 0.028
cg22865713 SLC17A4 Chr6: 25,779,897 −2.71% −3.38% 0.028
cg01993865 DSTN Chr20: 17,550,690 −0.60% −0.78% 0.028
cg18906596 ANKFY1 Chr17: 4,151,473 −2.73% −2.29% 0.028
cg05697697 XPNPEP1 Chr10: 111,683,345 0.66% 0.62% 0.028
cg07431064 CBX7 Chr22: 39,529,217 0.95% 1.12% 0.028
cg03345925 ZC3H3 Chr8: 144,599,347 3.39% 3.83% 0.028
cg06945690 ZNF167 Chr3: 44,621,374 2.09% 2.69% 0.031
cg10576992 SEC24D Chr4: 119,662,530 −2.73% −2.83% 0.031
cg26281025 HK3 Chr5: 176,308,046 1.04% 1.38% 0.031
cg08732684 ATF6B Chr6: 32,095,128 1.79% 2.20% 0.035
cg23376861 ATP5A1 Chr18: 43,678,713 −3.45% −4.32% 0.035
cg21143899 UCK2 Chr1: 165,866,296 1.42% 1.53% 0.035
cg02683621 North shore Chr7: 150,100,820 1.15% 1.59% 0.035
cg17921080 Open sea Chr14: 86,478,932 −1.85% −2.36% 0.035
cg07689396 PRKAR1B Chr7: 633,050 1.62% 1.42% 0.035
cg08077807 PRKCH Chr14: 62,001,072 −2.23% −2.53% 0.037
cg19143209 CpG island Chr9: 19,789,287 −2.43% −2.74% 0.039
cg15737302 North shelf Chr11: 118,302,063 −1.90% −1.85% 0.039
cg19169154 MFAP4 Chr17: 19,287,978 1.81% 3.21% 0.039
cg07018980 GAK Chr4: 895,604 1.04% 1.67% 0.040
cg10288510 CpG island Chr1: 214,158,727 −1.59% −0.89% 0.040
cg13153307 SEC16A Chr9: 139,368,749 1.89% 1.55% 0.040
cg10778517 MAD1L1 Chr7: 2,252,773 0.93% 1.18% 0.040
cg08440349 ATP2C2 Chr16: 84,486,704 1.57% 1.33% 0.040
cg01203331 NOP56; SNORD56, 57, 86 Chr20: 2,636,597 1.12% 1.49% 0.040
cg18502630 PTGDS Chr9: 139,871,955 1.44% 1.35% 0.040
cg03246914 TUBB1 Chr20: 57,596,113 −3.22% −3.05% 0.040
cg26706238 ABCG5; ABCG8 Chr2: 44,066,206 1.35% 1.27% 0.040
cg11703745 TMCC2 Chr1: 205,199,293 1.62% 1.87% 0.040
cg19830000 NELL2 Chr12: 45,270,312 −0.50% −0.48% 0.041
cg01205011 ZNF76 Chr6: 35,262,113 −2.28% −2.44% 0.041
cg01955962 CpG island Chr15: 73,089,536 −0.54% −0.64% 0.041
cg25871543 XAB2 Chr19: 7,686,181 0.91% 1.41% 0.041
cg13984931 North shelf Chr1: 162,788,667 −2.47% −2.10% 0.041
cg13706613 INPP5E Chr9: 139,324,927 1.36% 1.10% 0.041
cg03540894 North shelf Chr12: 133,611,606 −2.46% −2.84% 0.044
cg01968402 North shore Chr6: 137,817,775 0.71% 0.58% 0.044
cg26406256 HERC3; NAP1L5 Chr4: 89,619,393 1.51% 1.83% 0.046
cg04078644 North shelf Chr3: 155,458,975 −1.36% −1.69% 0.046
cg08542429 AGPAT1 Chr6: 32,139,120 1.49% 1.42% 0.046
cg04514868 MTA1 Chr14: 105,931,040 0.92% 1.08% 0.046
cg05536286 ST8SIA2 Chr15: 92,972,514 −1.13% −1.22% 0.046
cg08443019 OVCA2; DPH1 Chr17: 1,946,299 1.59% 1.41% 0.046
cg24119500 BAI3 Chr6: 69,420,780 −1.93% −1.77% 0.046
cg00273340 CCDC88B Chr 11: 64,112,444 1.22% 1.45% 0.046
cg00730857 WHSC2 Chr4: 1,994,281 0.89% 0.90% 0.046
cg12841566 MADD Chr11: 47,296,317 1.29% 0.94% 0.046
cg14088574 VPS52 Chr6: 33,234,976 1.17% 1.34% 0.046
cg25927444 TTC7A Chr2: 47,236,103 −2.23% −1.91% 0.046
cg09244071 CUX1 Chr7: 101,768,746 1.00% 1.38% 0.046
cg27509867 Open sea Chr8: 129,165,585 1.15% 1.42% 0.046
cg26828643 FAM38A Chr16: 88,802,820 1.46% 1.51% 0.048
cg22606873 PRDM16 Chr1: 3,144,679 −1.27% −1.21% 0.048
cg16126178 AKT1 Chr14: 105,239,857 1.11% 1.35% 0.048
cg16221240 CpG island Chr2: 130,970,934 −3.16% −2.49% 0.049
cg03280063 GAK Chr4: 893,186 1.22% 1.58% 0.049
cg00063535 TPCN1 Chr12: 113,729,491 1.35% 1.75% 0.049
cg08144943 PPM1M Chr3: 52,280,702 2.09% 1.91% 0.049
cg17881203 WDR18 Chr19: 990,398 0.82% 1.40% 0.049
cg20935025 NFKBIA Chr14: 35,874,013 1.94% 2.70% 0.049
cg14597908 GNAS Chr20: 57,414,960 1.79% 1.35% 0.049
  1. aAccording to the annotation provided by Illumina
  2. bPositive β difference indicates hypermethylation and negative β hypomethylation in the GDM group