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Table 1 Fifty-two CpG sites included in the epigenetic signature

From: Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy

CpG ID

Chr.

Gene name

Genetic location

Epigenetic location

Mean β Gleason ≤6

Mean β Gleason 8−10

Mean β difference

Elastic Net coefficient

cg10145000

1

   

0.44

0.31

0.12

−0.0043

cg00043324

1

   

0.87

0.90

0.03

0.2022

cg00506866

2

RRM2

Body

Island

0.16

0.11

0.04

−0.2591

cg02601249

2

  

S_Shore

0.80

0.62

0.17

−0.1426

cg15454811

2

   

0.82

0.65

0.17

−0.1904

cg09741917

2

VWA3B

TSS1500

N_Shore

0.49

0.63

0.14

0.3933

cg13607230

2

MFSD9

Body

N_Shore

0.43

0.56

0.13

0.5376

cg17353895

2

ANO7

3'UTR;Body

 

0.65

0.76

0.10

0.5339

cg05287437

3

GALNTL2

TSS1500

 

0.77

0.63

0.14

−1.5620

cg13333267

3

SEMA3F

5'UTR

S_Shelf

0.48

0.59

0.11

0.0180

cg13320202

3

ATXN7

Body

S_Shore

0.48

0.36

0.12

−0.0575

cg10523671

3

SLC15A2

TSS1500

 

0.45

0.62

0.17

0.3300

cg02034887

3

SLC15A2

TSS200

 

0.27

0.40

0.14

0.0982

cg05962239

3

MME

5'UTR;1stExon

S_Shore

0.24

0.14

0.10

−0.2355

cg27473997

4

USP17

TSS200

 

0.71

0.55

0.17

−0.2529

cg13432241

4

KIAA0922

Body

S_Shore

0.61

0.44

0.17

−0.4088

cg08415137

5

   

0.13

0.09

0.04

−0.0529

cg01106114

5

FOXI1

TSS1500

N_Shore

0.41

0.52

0.11

0.0330

cg20997710

7

   

0.47

0.30

0.17

−0.2326

cg03490567

7

URGCP

5'UTR;Body

N_Shore

0.23

0.34

0.10

0.0660

cg10218605

7

PTPRN2

Body

N_Shore

0.30

0.50

0.20

0.0037

cg00201595

8

   

0.82

0.78

0.04

−0.3187

cg08092111

8

RP1

Body

S_Shore

0.72

0.57

0.16

−0.0906

cg26598831

8

   

0.63

0.42

0.21

−0.1777

cg06728098

8

MRPS28

Body

N_Shore

0.12

0.10

0.02

−0.4359

cg17929627

10

MKI67

5'UTR

Island

0.17

0.11

0.06

−2.2937

cg23656300

10

   

0.71

0.55

0.16

−0.0168

cg20809737

11

CPT1A

Body

 

0.78

0.70

0.09

−0.7679

cg05280814

11

  

N_Shelf

0.55

0.73

0.18

0.8970

cg15401862

12

KCNMB4

3'UTR

 

0.87

0.80

0.07

−0.2301

cg02767665

12

TMEM132D

Body

S_Shore

0.63

0.45

0.18

−0.3594

cg22795345

13

ARHGEF7

Body

Island

0.35

0.64

0.29

0.2448

cg14270002

13

ARHGEF7

Body

Island

0.28

0.57

0.29

0.2159

cg24743156

14

CTAGE5

TSS1500;Body

N_Shore

0.32

0.43

0.11

0.0997

cg25407064

15

EIF2AK4

TSS200

Island

0.04

0.03

0.01

−1.5429

cg12921171

15

   

0.53

0.65

0.12

0.5505

cg18054026

15

C15orf26

Body

S_Shore

0.42

0.53

0.12

0.1548

cg11470399

16

PLK1

1stExon

Island

0.14

0.11

0.03

−1.5771

cg04138181

16

PLK1

Body

S_Shore

0.25

0.15

0.10

−1.1582

cg27106909

16

YPEL3

1stExon;5'UTR

N_Shore

0.20

0.37

0.17

0.2890

cg06285575

16

ZNF267

Body

S_Shelf

0.21

0.33

0.12

0.0053

cg09848947

16

FAM38A

Body

 

0.77

0.66

0.11

−0.4029

cg06751612

16

FAM38A

Body

 

0.86

0.76

0.11

−0.5474

cg10576459

17

   

0.89

0.79

0.10

−0.0067

cg01135464

17

   

0.33

0.57

0.24

0.7303

cg22438006

18

  

N_Shelf

0.66

0.49

0.18

−0.0625

cg07164161

18

KCNG2

Body

S_Shore

0.53

0.42

0.11

−0.0296

cg09960641

19

LOC100128675

TSS1500

 

0.31

0.46

0.14

0.2864

cg25286393

19

NAPSA

TSS1500

 

0.70

0.59

0.11

−0.0201

cg12551567

20

CDC25B

1stExon

Island

0.10

0.08

0.02

−0.4047

cg07944494

21

  

Island

0.94

0.96

0.02

0.1070

cg07260325

X

   

0.74

0.66

0.08

−0.1695