From: Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy
CpG ID | Chr. | Gene name | Genetic location | Epigenetic location | Mean β Gleason ≤6 | Mean β Gleason 8−10 | Mean β difference | Elastic Net coefficient |
---|---|---|---|---|---|---|---|---|
cg10145000 | 1 |  |  |  | 0.44 | 0.31 | 0.12 | −0.0043 |
cg00043324 | 1 | Â | Â | Â | 0.87 | 0.90 | 0.03 | 0.2022 |
cg00506866 | 2 | RRM2 | Body | Island | 0.16 | 0.11 | 0.04 | −0.2591 |
cg02601249 | 2 |  |  | S_Shore | 0.80 | 0.62 | 0.17 | −0.1426 |
cg15454811 | 2 |  |  |  | 0.82 | 0.65 | 0.17 | −0.1904 |
cg09741917 | 2 | VWA3B | TSS1500 | N_Shore | 0.49 | 0.63 | 0.14 | 0.3933 |
cg13607230 | 2 | MFSD9 | Body | N_Shore | 0.43 | 0.56 | 0.13 | 0.5376 |
cg17353895 | 2 | ANO7 | 3'UTR;Body | Â | 0.65 | 0.76 | 0.10 | 0.5339 |
cg05287437 | 3 | GALNTL2 | TSS1500 |  | 0.77 | 0.63 | 0.14 | −1.5620 |
cg13333267 | 3 | SEMA3F | 5'UTR | S_Shelf | 0.48 | 0.59 | 0.11 | 0.0180 |
cg13320202 | 3 | ATXN7 | Body | S_Shore | 0.48 | 0.36 | 0.12 | −0.0575 |
cg10523671 | 3 | SLC15A2 | TSS1500 | Â | 0.45 | 0.62 | 0.17 | 0.3300 |
cg02034887 | 3 | SLC15A2 | TSS200 | Â | 0.27 | 0.40 | 0.14 | 0.0982 |
cg05962239 | 3 | MME | 5'UTR;1stExon | S_Shore | 0.24 | 0.14 | 0.10 | −0.2355 |
cg27473997 | 4 | USP17 | TSS200 |  | 0.71 | 0.55 | 0.17 | −0.2529 |
cg13432241 | 4 | KIAA0922 | Body | S_Shore | 0.61 | 0.44 | 0.17 | −0.4088 |
cg08415137 | 5 |  |  |  | 0.13 | 0.09 | 0.04 | −0.0529 |
cg01106114 | 5 | FOXI1 | TSS1500 | N_Shore | 0.41 | 0.52 | 0.11 | 0.0330 |
cg20997710 | 7 |  |  |  | 0.47 | 0.30 | 0.17 | −0.2326 |
cg03490567 | 7 | URGCP | 5'UTR;Body | N_Shore | 0.23 | 0.34 | 0.10 | 0.0660 |
cg10218605 | 7 | PTPRN2 | Body | N_Shore | 0.30 | 0.50 | 0.20 | 0.0037 |
cg00201595 | 8 |  |  |  | 0.82 | 0.78 | 0.04 | −0.3187 |
cg08092111 | 8 | RP1 | Body | S_Shore | 0.72 | 0.57 | 0.16 | −0.0906 |
cg26598831 | 8 |  |  |  | 0.63 | 0.42 | 0.21 | −0.1777 |
cg06728098 | 8 | MRPS28 | Body | N_Shore | 0.12 | 0.10 | 0.02 | −0.4359 |
cg17929627 | 10 | MKI67 | 5'UTR | Island | 0.17 | 0.11 | 0.06 | −2.2937 |
cg23656300 | 10 |  |  |  | 0.71 | 0.55 | 0.16 | −0.0168 |
cg20809737 | 11 | CPT1A | Body |  | 0.78 | 0.70 | 0.09 | −0.7679 |
cg05280814 | 11 | Â | Â | N_Shelf | 0.55 | 0.73 | 0.18 | 0.8970 |
cg15401862 | 12 | KCNMB4 | 3'UTR |  | 0.87 | 0.80 | 0.07 | −0.2301 |
cg02767665 | 12 | TMEM132D | Body | S_Shore | 0.63 | 0.45 | 0.18 | −0.3594 |
cg22795345 | 13 | ARHGEF7 | Body | Island | 0.35 | 0.64 | 0.29 | 0.2448 |
cg14270002 | 13 | ARHGEF7 | Body | Island | 0.28 | 0.57 | 0.29 | 0.2159 |
cg24743156 | 14 | CTAGE5 | TSS1500;Body | N_Shore | 0.32 | 0.43 | 0.11 | 0.0997 |
cg25407064 | 15 | EIF2AK4 | TSS200 | Island | 0.04 | 0.03 | 0.01 | −1.5429 |
cg12921171 | 15 | Â | Â | Â | 0.53 | 0.65 | 0.12 | 0.5505 |
cg18054026 | 15 | C15orf26 | Body | S_Shore | 0.42 | 0.53 | 0.12 | 0.1548 |
cg11470399 | 16 | PLK1 | 1stExon | Island | 0.14 | 0.11 | 0.03 | −1.5771 |
cg04138181 | 16 | PLK1 | Body | S_Shore | 0.25 | 0.15 | 0.10 | −1.1582 |
cg27106909 | 16 | YPEL3 | 1stExon;5'UTR | N_Shore | 0.20 | 0.37 | 0.17 | 0.2890 |
cg06285575 | 16 | ZNF267 | Body | S_Shelf | 0.21 | 0.33 | 0.12 | 0.0053 |
cg09848947 | 16 | FAM38A | Body |  | 0.77 | 0.66 | 0.11 | −0.4029 |
cg06751612 | 16 | FAM38A | Body |  | 0.86 | 0.76 | 0.11 | −0.5474 |
cg10576459 | 17 |  |  |  | 0.89 | 0.79 | 0.10 | −0.0067 |
cg01135464 | 17 | Â | Â | Â | 0.33 | 0.57 | 0.24 | 0.7303 |
cg22438006 | 18 |  |  | N_Shelf | 0.66 | 0.49 | 0.18 | −0.0625 |
cg07164161 | 18 | KCNG2 | Body | S_Shore | 0.53 | 0.42 | 0.11 | −0.0296 |
cg09960641 | 19 | LOC100128675 | TSS1500 | Â | 0.31 | 0.46 | 0.14 | 0.2864 |
cg25286393 | 19 | NAPSA | TSS1500 |  | 0.70 | 0.59 | 0.11 | −0.0201 |
cg12551567 | 20 | CDC25B | 1stExon | Island | 0.10 | 0.08 | 0.02 | −0.4047 |
cg07944494 | 21 | Â | Â | Island | 0.94 | 0.96 | 0.02 | 0.1070 |
cg07260325 | X |  |  |  | 0.74 | 0.66 | 0.08 | −0.1695 |