Skip to main content

Advertisement

Table 2 Top eight CpG sites with nRBC-distinct DNAm from white blood cells in cord blood

From: Nucleated red blood cells impact DNA methylation and expression analyses of cord blood hematopoietic cells

450K array CpG identifier CpG location: chromosome, closest gene Location in gene Mean nRBC β (min., max.) Mean non-erythroid cell β (min., max.)
cg05012676 16, ZFPM1 Intron 0.421 0.937
(0.298, 0.508) (0.896, 0.963)
cg06768361 12, TESC Intron; enhancera 0.336 0.924
(0.211, 0.426) (0.825, 0.978)
cg10018933 2, HDAC4 Intron; enhancerb 0.410 0.922
(0.346, 0.468) (0.890, 0.953)
cg15974642 10, IFIT1B TSS200 0.362 0.939
(0.234, 0.475) (0.904, 0.957)
cg18168751 4, IDUA TSS1500; enhancera 0.435 0.951
(0.356, 0.556) (0.924, 0.969)
cg20555305 8, CPSF1 Intron 0.369 0.878
(0.277, 0.481) (0.823, 0.917)
cg25105522 17, MAP3K14 Intron; enhancerb 0.224 0.872
(0.126, 0.300) (0.750, 0.962)
cg26876834 16, SNORA64 & RPS2 SNORA64: TSS1500 0.369 0.890
RPS2: Intron (0.227, 0.440) (0.839, 0.938)
  1. aBased on UCSC Genome Browser: ENCODE enhancer- and promoter-associated histone mark (H3K4Me1) in the K562 cell line
  2. bBased on Illumina 450K array annotation