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Table 1 Interspersed repetitive sequence hypomethylation in cancer

From: Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications

Type of cancer Repeated sequence Hypomethylation Reference
Abdominal paragangrioma LINE-1 Yes Geli et al. (2008)
Breast cancer Alu Yes Cho et al. (2010)
LINE-1 Yes Cho et al. (2010)
Cervical cancer LINE-1 Yes Shuangshoti et al. (2007)
Cholangiocarcinoma LINE-1 Yes Kim et al. (2009a)
Colorectal cancer Alu Yes Kwon et al. (2010; Rodriguez et al. (2008)
LINE-1 Yes Chalitchagorn et al. (2004; Suter et al. (2004); Matsuzaki et al. (2005); Estecio et al. (2007); Iacopetta et al. (2007); Ogino et al. (2008a); Nosho et al. (2009a, b); An et al. (2010); Baba et al. (2010); Ibrahim et al. (2011); Irahara et al. (2010); Kawakami et al. (2011); Kwon et al. (2010)
Ependymoma Alu Yes Xie et al. (2010)
Esophagus cancer LINE-1 Yes Chalitchagorn et al. (2004)
Gastric cancer Alu Yes Yoo et al. (2008); Park et al. (2009); Hou et al. (2010); Xiang et al. (2010); Yoshida et al. (2011)
LINE-1 Yes Chalitchagorn et al. (2004; Yoo et al. (2008); Park et al. (2009); Yoshida et al. (2011)
Germ cell tumor LINE-1 Yes Alves et al. (1996)
Fibrolamellar carcinoma of liver LINE-1 No Trankenschuh et al. (2010)
Head and neck squamous cell cancer LINE-1 Yes Chalitchagorn et al. (2004); Hsiung et al. (2007); Smith et al. (2007); Subbalekha et al. (2009)
Hepatoma Alu Yes Lee et al. (2009)
LINE-1 Yes Takai et al. (2000); Chalitchagorn et al. (2004); Tangkijvanich et al. (2007); Lee et al. (2009); Kim et al. (2009b); Formeister et (al. 2010); Trankenschuh et al. (2010)
Leukemia (acute promyelocytic leukemia) Alu Yb8 No Choi et al. (2009)
LINE-1 No Choi et al. (2009)
Leukemia (chronic myelogenous leukemia) Alu Yes Roman-Gomez et al. (2008); Fabris et al. (2011)
LINE-1 Yes Roman-Gomez et al. (2008); Roman-Gomez et al. (2005); Fabris et al. (2011)
Leukemia (plasma cell leukemia) LINE-1 Yes Bollati et al. (2009)
Lung cancer (non-small cell lung cancer) Alu Yes Daskalos et al. (2009)
LINE-1 Yes Chalitchagorn et al. (2004); Daskalos et al. (2009); Jin et al. (2009); Saito et al. (2010)
Lymphoma LINE-1 No Chalitchagorn et al. (2004)
Malignant peripheral nerve sheath tumor LINE-1 No Feber et al. (2011)
Melanoma LINE-1 Yes Tellez et al. (2009)
Multiple myeloma Alu Yes Bollati et al. (2009)
LINE-1 Yes Bollati et al. (2009)
Neuroendocrine tumor Alu Yes Choi et al. (2007)
LINE-1 Yes Choi et al. (2007)
Neurofibromatosis LINE-1 No Feber et al. (2011)
Ovarian cancer AluHER Yes Watts et al. (2008)
V-W Yes Menendez et al. (2004)
LINE-1 Yes Menendez et al. (2004); Pattamadilok et al. (2008); Woloszynska-Read et al. (2008); Dammann et al. (2010)
Parathyroid adenoma LINE-1 No Juhlin et al. (2010)
Pheochromocytoma LINE-1 Yes Geli et al. (2008)
Prostate cancer Alu Yes Kim et al. (2011)
LINE-1 Yes Santourlidis et al. (1999; Schulz et al. (2002); Chalitchagorn et al. (2004); Florl et al. (2004); Kindich et al. (2006); Yegnasubramanian et al. (2008); Cho et al. (2009)
Renal cell carcinoma LINE-1 No Florl et al. (1999); Chalitchagorn et al. (2004)
Thyroid cancer (follicular type) LINE-1 No Lee et al. (2008)
Thyroid cancer (papillary type) LINE-1 No Chalitchagorn et al. (2004)
Urothelial cancer HERV-K Yes Florl et al. (1999)
Alu Yb8 Yes Choi et al. (2009)
LINE-1 Yes Jurgens et al. (1996); Florl et al. (1999); Neuhausen et al. (2006); Choi et al. (2009); Wilhelm et al. (2010); Wolff et al. (2010)